User guide
H2020 SABYDOMA - eNanoMapper database


Click on SABYDOMA icon to go to the H2020 SABYDOMA database


Ask your WP leader for database access

Main project page


Click on the Search link to go to the Search page

Search page


There are several summaries at the left panel:

Every panel is expandable and shows the types of elements found for the particular query

Expand the Projects panel and click on NANOREG1. This will filter the results and only data generated by NANOREG1 project will be shown.


The filters can be combined.

Expand the Nanomaterial type panel and select silicon dioxide. These are ontology terms assigned to each material , e.g. NPO_373


The panels show the types and counts of elements found for the particular query

i.e, the NANOREG1 project and silicon dioxide materials in this case.

The Methods panel shown indicate there is NANOREG1 data for silicon dioxide measured by these methods. The Method annotation panel contains the ontology terms denoting the same methods.


Exploring the data

Per material - click the Material and Study details link for particular material


Export data for all query results - Export tab

Compact summary report


The report is an Excel file


Data export

Select the TXT icon and click on Download filtered entries as TSV


The result is a spreadsheet (.txt , tab separated text file)


Predefined queries

predefined queries

Select Ecotoxicity studies and click Apply. This will change the active query and will select all materials with ecotoxicity data.

predefined queries results

This query could be further refined using the widgets at the left, and data exported as described.

Search by ontology terms

OBI_0302736 (comet assay) is a term defined in Ontology for Biomedical Investigations (OBI) BioPortal link

pontology query


Programmatic access (Application Programming Interface - API)

API documentation


eNanoMapper client libraries

Jupyter notebooks

Summary charts generated with explore.ipynb



Data entry

While the eNanoMapper database supports structured formats for data import (e.g. IUCLID5/6 files, W3C RDF), JSON, the data originating from NanoSafety Cluster during the last decade is predominantly provided in the form of custom spreadsheet (MS Excel) templates.

To steer the spreadsheet layout design towards harmonization, while retaining the user friendliness and the features deemed important by the labs, we provide a
Template Wizard


Template Wizard

The files will be taken from the agreed results location, assigned a NMDataParser configuration and imported into project-specific eNanoMapper database instance, using the eNanoMapper FAIRification workflow

This guide is available at Help/User guide