H2020 caLIBRAte

User guide

H2020 caLIBRAte - eNanoMapper database

https://search.data.enanomapper.net

Portal

Click on CALIBRATE icon to go to the H2020 CALIBRATE database

The Calibrate database is accessible only to project partners.
The logos on the right indicate which projects the data contents comes from.

Ask your WP leader for database access

In case you don't have user and password
In case you have used eNanoMapper database from another project (e.g. NanoReg2)
In case you have self-registered - while registration is open to anybody, the new users has to be approved (and be project members)! Self registration will not grant access to the database !

Main project page

Once logged in, the main project page appears. There are several links to the Search, Template Wizard, User guide (this page), etc.

main

Click on the Search link to go to the Search page

Search page

On the search page there is a search box on the top right , a summary panel on the left and the results are shown at the main panel.
The database includes results from multiple sources.

main

There are several summaries at the left panel:

Project
Study providers
Nanomaterial type
Nanomaterials
Protocols
Protocol annotation
Method
Method annotation
P-Chem
Tox
Ecotox
Cell
Experiment year
References
Endpoint
Endpoint annotation
Release

Every panel is expandable and shows the types of elements found for the particular query

Expand the Projects panel and click on CALIBRATE. This will filter the results and only data generated by CALIBRATE project will be shown.

The filters can be combined.

Expand the Nanomaterial type panel and select silicon dioxide. These are ontology terms assigned to each material , e.g. NPO_373

filter1

The panels show the types and counts of elements found for the particular query

i.e, the CALIBRATE project and silicon dioxide materials in this case.

The Methods panel shown indicate there is CALIBRATE data for silicon dioxide measured by these methods. The Method annotation panel contains the ontology terms denoting the same methods.

filter2

Exploring the data

Per material - click the Material and Study details link for particular material

study

Export data for all query results - Export tab

Compact summary report

select Compact data report from the dropdown menu, click on XLSX icon and finally click on Download filtered entries as XLSX

export_compact

The report is an Excel file

export_compact_results

Try exporting the same data into different report layouts (select from the dropdown menu).

Data export

Select the `TXT` icon and click on `Download filtered entries as TSV`

export_tsv

The result is a spreadsheet (`.txt` , tab separated text file)

export_tsv_results

Predefined queries

predefined queries

Select Physicochemical studies and click Apply. This will change the active query and will select all materials with physico-chemical characterisations.

predefined queries results