Templates Wizard gallery
H2020 NanoinformaTIX - eNanoMapper database
Template Wizard linkTemplateProject/ProviderTypeCategoryStatus
DEFAULT In-vitro assay A generic dose response template. /IOM doseresponse Cell Viability published
COMET COMET The comet assay, also called SCGE (Single Cell Gel Electrophoresis), is a rapid and informative method to detect DNA damage at single cell level used on many different cell types. The assay detects single and double strand DNA breaks as a consequence of a direct damage or as intermediate of DNA repair processes and it is successfully applied both in in vivo and in vitro genotoxicity testing. RISKGONE/NILU doseresponse Genetic toxicity in vitro published
CFE Colony Forming Efficiency The colony forming efficiency assay (CFE) (also called clonogenic or plating efficiency assay) measures the ability of cells to survive and form colonies, which is an ultimate index of cytotoxicity. RISKGONE/NILU doseresponse Cell Viability published
ALAMARBLUE Alamar Blue The Alamar Blue (AB) assay is a high throughput, cell metabolism-based method largely applied in toxicology and nanotoxicology to investigate cell viability (cytotoxicity), cell proliferation and cellular metabolic activity in response to chemicals and nanomaterials. RISKGONE/NILU doseresponse Cell Viability published
WST1 WST-1 Assay for Cell Proliferation and Viability GRACIOUS/BfR doseresponse Cell Viability published
NRU Neutral Red Uptake Assay GRACIOUS/BfR doseresponse Cell Viability published
HPRT HPRT gene mutation assay - SWANSEA layout The hypoxanthine-guanine phosphoribosyl transferase (HPRT) gene is located on the X chromosome of mammalian cells and is used as a model gene to investigate gene mutation. The in vitro mammalian cell gene mutation assay is significantly important for detecting point mutations induced by engineered nanomaterials (ENMs) as the bacterial reverse gene mutation assay (Ames test) is not appropriate for use with these materials. RISKGONE/SWANSEA doseresponse Genetic toxicity in vitro published
BARRIERCROSSING Barrier crossing NANOINFORMATIX/ doseresponse Barrier integrity published
DEFAULT In-vitro assay A generic dose response template. /IOM doseresponse Cell Viability published
MICRONUCLEUS Long-Term 3D cytokinesis-blocked micronucleus (CBMN) assay The template for 3D cell models follows the structure of a 2D template. Still, it differs in the “Raw data” spreadsheet, where the metadata expected to be filled up follows the specificity of experiments to detect micronucleus in 3D spheroids (PATROLS, D4.1 SOPs for GIT and liver 3D advanced models optimised for long-term exposures. PATROLS/SWANSEA doseresponse Genetic toxicity in vitro published
CBMN Acute 2D/3D cytokinesis-blocked micronucleus (CBMN) assay The micronucleus assay is considered the gold standard for detecting chromosomal damage in vitro. The assay is designed so that cells exposed to a genotoxic test agent result in chromosomal breakage forming small spherical nuclei (micronuclei) being detected as fixed DNA damage. NANOINFORMATIX/FIOH doseresponse Genetic toxicity in vitro published
PC_GRANULOMETRY_GRACIOUS Particle size distribution by ES-DMA, CLS (AUC) (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Particle size distribution (Granulometry) published
PC_GRANULOMETRY_DLS Hydrodynamic particle size by DLS (CC BY-SA 4.0) http://dx.doi.org/10.2787/505397 NANOREG/JRC pchem Particle size distribution (Granulometry) published
PC_GRANULOMETRY_TEM Particle size distribution by TEM (CC BY-SA 4.0) http://dx.doi.org/10.2787/505397 NANOREG/JRC pchem Particle size distribution (Granulometry) published
PC_GRANULOMETRY_NTA Particle size and particle counting by Nanoparticle Tracking Analysis (CC BY-SA 4.0) NTA technique provides size characterization based on the free diffusion behavior of particles in solution. NTA measures particle diffusion by tracking the random motion of single particles in solution via high temporal-resolution video acquisition and enhanced contrast microscopy. The diffusion of the objects in suspension is measured with single-particle resolution, and hence it is particularly suitable for the characterization of size distribution for highly polydisperse nanoparticle populations. http://dx.doi.org/10.2787/505397 NANOREG/JRC pchem Particle size distribution (Granulometry) published
PC_DUSTINESS Dustiness with small drum (CC BY-SA 4.0) http://dx.doi.org/10.2787/505397 NANOREG/JRC pchem Dustiness published
DENSITY_HEPYCNOMETER Density - He Pycnometer (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Density published
DENSITY_EFFECTIVE Effective density (CC BY-SA 4.0) Multiple materials and results in JRC/NANoREG template style http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Density published
ZETAPOTENTIAL Zeta Potential (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Zeta potential published
REDOXPOTENTIAL Redox Potential NANOINFORMATIX/ pchem Oxidative Stress published
PC_SURFACECHEMISTRY_TGA Surface Chemistry (TGA) (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Analytical Methods published
PC_SURFACECHEMISTRY_FTIR Surface Chemistry (FTIR) (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Analytical Methods published
PC_SPECTRA_RAMAN NANOREG Raman data template (updated by PLASTICFATE) (CC BY-SA 4.0) PLASTICFATE/CSIC pchem Analytical Methods published
SSA_SEARSTITRATION Specific Surface Area by Sears Titration (for colloidal silica) (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Specific surface area published
SSA_BET Specific Surface Area by BET (Brunauer, Emmett and Teller) method (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Specific surface area published
HYDROPHOBICITY_CONTACTANGLE Hydrophobicity by Contact Angle (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Water solubility published
SURFACECHEMISTRY_XPS Surface Chemistry by X-ray Photoelectron Spectroscopy (XPS) (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Surface chemistry published
COMPOSITION_XRF Elemental composition and chemical purity by X-ray Fluorescence (XRF) (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Analytical Methods published
CRYSTALLINITY_XRD Crystallinity by X-Ray diffraction (XRD) (CC BY-SA 4.0) http://dx.doi.org/10.2760/142959 GRACIOUS/JRC pchem Crystalline phase published
ECOTOX Ecotoxicity - fish, daphnia, algae, soil (CC BY-SA 4.0) http://dx.doi.org/10.2787/505397 NANOREG/JRC ecotox Short-term toxicity to aquatic inverterbrates published
OMICS Omics metadata (CC BY-NC-SA 4.0) А metadata map for omics data with columns relevant for nanosafety. Omics data stored in e.g. Gene Expression Omnibus (GEO), ArrayExpress, or PRIDE implement omics community standards, including minimum information requirements for omics experiments. However, the databases lack field-specific metadata, such as that defined within the nanosafety community, which leads to poor interoperability with other types of data and databases. NANOREG2/KI metadata Omics metadata published
OMICSINVIVO Omics in-vivo metadata (CC BY-NC-SA 4.0) OMICS template extended with fields for in-vivo studies HARMLESS/KI,NRCWE metadata Omics metadata published