User guide
H2020 GRACIOUS - eNanoMapper database

https://search.data.enanomapper.net

Portal

Click on GRACIOUS icon to go to the H2020 GRACIOUS database

login

Ask your WP leader for database access

Main project page

main

Click on the Search link to go to the Search page

Search page

main

There are several summaries at the left panel:

Every panel is expandable and shows the types of elements found for the particular query

Expand the Projects panel and click on GRACIOUS. This will filter the results and only data generated by GRACIOUS project will be shown.

search

The filters can be combined.

Expand the Nanomaterial type panel and select quantum dot. These are ontology terms assigned to each material , e.g. NPO_589

filter1

The panels show the types and counts of elements found for the particular query

i.e, the GRACIOUS project and quantum dot materials in this case.

The Methods panel shown indicate there is GRACIOUS data for quantum dot measured by these methods. The Method annotation panel contains the ontology terms denoting the same methods.

filter2

Exploring the data

Per material - click the Material and Study details link for particular material

study

Export data for all query results - Export tab

Compact summary report

export_compact

The report is an Excel file

export_compact_results

Data export

Select the TXT icon and click on Download filtered entries as TSV

export_tsv

The result is a spreadsheet (.txt , tab separated text file)

export_tsv_results

Predefined queries

predefined queries

Select EP_MASS_SPECIFIC_SURFACE_AREA and click Apply. This will change the active query and will select materials with experimental data for specific surface area..

predefined queries results

This query could be further refined using the widgets at the left, and data exported as described.

Search by ontology terms

OBI_0302736 (comet assay) is a term defined in Ontology for Biomedical Investigations (OBI) BioPortal link

pontology query

Project wise summary

summary

Programmatic access (Application Programming Interface - API)

API documentation

apidocs

eNanoMapper client libraries

Jupyter notebooks

https://github.com/ideaconsult/notebooks-ambit/blob/master/enanomapper/tutorial.ipynb https://github.com/ideaconsult/notebooks-ambit/blob/master/enanomapper/summary.ipynb https://github.com/ideaconsult/notebooks-ambit/blob/master/enanomapper/explore.ipynb

Summary charts generated with explore.ipynb

jp1

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Data entry

While the eNanoMapper database supports structured formats for data import (e.g. IUCLID5/6 files, W3C RDF), JSON, the data originating from NanoSafety Cluster during the last decade is predominantly provided in the form of custom spreadsheet (MS Excel) templates.

To steer the spreadsheet layout design towards harmonization, while retaining the user friendliness and the features deemed important by the labs, we provide a
Template Wizard

template_wizard

Template Wizard

The files will be taken from the agreed results location, assigned a NMDataParser configuration and imported into project-specific eNanoMapper database instance, using the eNanoMapper FAIRification workflow

This guide is available at Help/User guide